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  5. PF3D7_1224300

PF3D7_1224300 (PABP1)


Aliases : PABP1

Description : SSF63570: PABC (PABP) domain, SSF54928: RNA-binding domain superfamily. Pfam domain(s): PF00076: "RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)", PF00658: "Poly-adenylate binding protein, unique domain".


Gene families : OG_01_0002158 (Orthofinderv1.1.8) Phylogenetic Tree(s): OG0002158_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pfa RNA-seq: PF3D7_1224300
Cluster P. falciparum: Cluster_28


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan predictions
MF GO:0003676 nucleic acid binding IEA PlasmoDB
MF GO:0003723 RNA binding IEA Interproscan predictions
MF GO:0003723 RNA binding IEA PlasmoDB
CC GO:0005737 cytoplasm ISO PlasmoDB
CC GO:0005829 cytosol ISO PlasmoDB
MF GO:0008143 poly(A) binding ISO PlasmoDB
CC GO:0009986 cell surface IDA PlasmoDB
CC GO:0034399 nuclear periphery ISO PlasmoDB
CC GO:0043186 P granule ISO PlasmoDB
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000387 spliceosomal snRNP assembly IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0000900 translation repressor activity, mRNA regulatory element binding IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004012 phospholipid-translocating ATPase activity IEP Predicted GO
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005087 Ran guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005548 phospholipid transporter activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005665 RNA polymerase II, core complex IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005798 Golgi-associated vesicle IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006417 regulation of translation IEP Predicted GO
BP GO:0006446 regulation of translational initiation IEP Predicted GO
BP GO:0006498 N-terminal protein lipidation IEP Predicted GO
BP GO:0006499 N-terminal protein myristoylation IEP Predicted GO
BP GO:0006528 asparagine metabolic process IEP Predicted GO
BP GO:0006529 asparagine biosynthetic process IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010608 posttranscriptional regulation of gene expression IEP Predicted GO
BP GO:0015748 organophosphate ester transport IEP Predicted GO
BP GO:0015914 phospholipid transport IEP Predicted GO
BP GO:0015917 aminophospholipid transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
BP GO:0018377 protein myristoylation IEP Predicted GO
MF GO:0019107 myristoyltransferase activity IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
CC GO:0030015 CCR4-NOT core complex IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030134 COPII-coated ER to Golgi transport vesicle IEP Predicted GO
CC GO:0030135 coated vesicle IEP Predicted GO
MF GO:0030371 translation repressor activity IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0031365 N-terminal protein amino acid modification IEP Predicted GO
CC GO:0031982 vesicle IEP Predicted GO
BP GO:0032268 regulation of cellular protein metabolic process IEP Predicted GO
BP GO:0034248 regulation of cellular amide metabolic process IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0036265 RNA (guanine-N7)-methylation IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043484 regulation of RNA splicing IEP Predicted GO
BP GO:0044053 translocation of peptides or proteins into host cell cytoplasm IEP Predicted GO
MF GO:0045182 translation regulator activity IEP Predicted GO
BP GO:0045787 positive regulation of cell cycle IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0048522 positive regulation of cellular process IEP Predicted GO
BP GO:0050684 regulation of mRNA processing IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
BP GO:1903311 regulation of mRNA metabolic process IEP Predicted GO
CC GO:1903561 extracellular vesicle IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 106 174
IPR000504 RRM_dom 452 520
IPR000504 RRM_dom 195 257
IPR000504 RRM_dom 18 86
IPR002004 PABP_HYD 805 871
PlasmoDB 2277.t00234
PlasmoDB 811286
PlasmoDB MAL12P1.234
PlasmoDB PFL1170w