1. Home
  2. Species
  3. Plasmodium falciparum 3D7
  4. Sequence
  5. PF3D7_1327700

PF3D7_1327700 (UPF3B)


Aliases : UPF3B

Description : SSF54928: RNA-binding domain superfamily. Pfam domain(s): PF03467: Smg-4/UPF3 family.


Gene families : OG_01_0003120 (Orthofinderv1.1.8) Phylogenetic Tree(s): OG0003120_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pfa RNA-seq: PF3D7_1327700
Cluster P. falciparum: Cluster_9


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA PlasmoDB
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
CC GO:0000214 tRNA-intron endonuclease complex IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
CC GO:0000408 EKC/KEOPS complex IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004753 saccharopine dehydrogenase activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0016075 rRNA catabolic process IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034661 ncRNA catabolic process IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
MF GO:0047131 saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity IEP Predicted GO
MF GO:0051731 polynucleotide 5'-hydroxyl-kinase activity IEP Predicted GO
MF GO:0051733 polydeoxyribonucleotide kinase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR005120 UPF3_dom 111 242
PlasmoDB 814128
PlasmoDB PF13_0158