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  5. PBANKA_0104600

PBANKA_0104600 (RAD50)


Aliases : RAD50

Description : SSF52540: P-loop containing nucleoside triphosphate hydrolase. Pfam domain(s): PF13476: AAA domain.


Gene families : OG_01_0000460 (Orthofinderv1.1.8) Phylogenetic Tree(s): OG0000460_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pbe RNA-seq: PBANKA_0104600
Cluster P. berghei: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
PF3D7_0605800 RAD50 SSF52540: P-loop containing nucleoside triphosphate... 0.03 Orthofinderv1.1.8

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding ISS PlasmoDB
BP GO:0006302 double-strand break repair ISS PlasmoDB
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Type GO Term Name Evidence Source
BP GO:0000070 mitotic sister chromatid segregation IEP Predicted GO
BP GO:0000481 maturation of 5S rRNA IEP Predicted GO
CC GO:0000798 nuclear cohesin complex IEP Predicted GO
BP GO:0000819 sister chromatid segregation IEP Predicted GO
MF GO:0003680 AT DNA binding IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005684 U2-type spliceosomal complex IEP Predicted GO
CC GO:0005813 centrosome IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006892 post-Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006895 Golgi to endosome transport IEP Predicted GO
CC GO:0008278 cohesin complex IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
CC GO:0030892 mitotic cohesin complex IEP Predicted GO
CC GO:0034990 nuclear mitotic cohesin complex IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
MF GO:0043138 3'-5' DNA helicase activity IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0098813 nuclear chromosome segregation IEP Predicted GO
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR038729 Rad50/SbcC_AAA 6 238
PlasmoDB PB000769.00.0
PlasmoDB PB107227.00.0
PlasmoDB PB300714.00.0
PlasmoDB PBANKA_010460