Description : SSF48662: Ribosomal protein L39e domain superfamily. Pfam domain(s): PF00832: Ribosomal L39 protein.
Gene families : OG_01_0002293 (Orthofinderv1.1.8) Phylogenetic Tree(s): OG0002293_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pbe RNA-seq: PBANKA_0110000 | |
Cluster | P. berghei: Cluster_27 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
PF3D7_0611700 | RPL39 | SSF48662: Ribosomal protein L39e domain superfamily.... | 0.14 | Orthofinderv1.1.8 |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan predictions |
MF | GO:0003735 | structural constituent of ribosome | IEA | PlasmoDB |
CC | GO:0005622 | intracellular | IEA | Interproscan predictions |
CC | GO:0005622 | intracellular | IEA | PlasmoDB |
CC | GO:0005840 | ribosome | IEA | Interproscan predictions |
CC | GO:0005840 | ribosome | IEA | PlasmoDB |
BP | GO:0006412 | translation | IEA | Interproscan predictions |
BP | GO:0006412 | translation | IEA | PlasmoDB |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000027 | ribosomal large subunit assembly | IEP | Predicted GO |
BP | GO:0001522 | pseudouridine synthesis | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0008097 | 5S rRNA binding | IEP | Predicted GO |
MF | GO:0017069 | snRNA binding | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
MF | GO:0030515 | snoRNA binding | IEP | Predicted GO |
MF | GO:0030621 | U4 snRNA binding | IEP | Predicted GO |
CC | GO:0030687 | preribosome, large subunit precursor | IEP | Predicted GO |
CC | GO:0033643 | host cell part | IEP | Predicted GO |
MF | GO:0034511 | U3 snoRNA binding | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
BP | GO:0042273 | ribosomal large subunit biogenesis | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
CC | GO:0044217 | other organism part | IEP | Predicted GO |
CC | GO:0044228 | host cell surface | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000077 | Ribosomal_L39 | 10 | 49 |
PlasmoDB | PB402098.00.0 |
PlasmoDB | PBANKA_011000 |