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  5. PBANKA_0716000

PBANKA_0716000 (SMC3)


Aliases : SMC3

Description : SSF75553: SMCs flexible hinge superfamily, SSF52540: P-loop containing nucleoside triphosphate hydrolase. Pfam domain(s): PF02463: RecF/RecN/SMC N terminal domain, PF06470: SMC proteins Flexible Hinge Domain.


Gene families : OG_01_0000286 (Orthofinderv1.1.8) Phylogenetic Tree(s): OG0000286_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pbe RNA-seq: PBANKA_0716000
Cluster P. berghei: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
PF3D7_0414000 SMC3 SSF52540: P-loop containing nucleoside triphosphate... 0.08 Orthofinderv1.1.8

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan predictions
MF GO:0005515 protein binding IEA PlasmoDB
MF GO:0005524 ATP binding IEA Interproscan predictions
MF GO:0005524 ATP binding IEA PlasmoDB
CC GO:0005694 chromosome IEA Interproscan predictions
CC GO:0005694 chromosome IEA PlasmoDB
BP GO:0051276 chromosome organization IEA Interproscan predictions
BP GO:0051276 chromosome organization IEA PlasmoDB
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Type GO Term Name Evidence Source
BP GO:0000070 mitotic sister chromatid segregation IEP Predicted GO
BP GO:0000255 allantoin metabolic process IEP Predicted GO
BP GO:0000256 allantoin catabolic process IEP Predicted GO
CC GO:0000798 nuclear cohesin complex IEP Predicted GO
BP GO:0000819 sister chromatid segregation IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003680 AT DNA binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004037 allantoicase activity IEP Predicted GO
MF GO:0004824 lysine-tRNA ligase activity IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006430 lysyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006897 endocytosis IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
CC GO:0008278 cohesin complex IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines IEP Predicted GO
CC GO:0020036 Maurer's cleft IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
CC GO:0030892 mitotic cohesin complex IEP Predicted GO
CC GO:0034990 nuclear mitotic cohesin complex IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0043605 cellular amide catabolic process IEP Predicted GO
CC GO:0043656 intracellular region of host IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0098657 import into cell IEP Predicted GO
BP GO:0098813 nuclear chromosome segregation IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 2 1148
IPR010935 SMC_hinge 507 632
PlasmoDB PB000466.01.0
PlasmoDB PB000593.03.0
PlasmoDB PB300513.00.0
PlasmoDB PBANKA_071600