PBANKA_1024100 (SPB4)


Aliases : SPB4

Description : SSF52540: P-loop containing nucleoside triphosphate hydrolase. Pfam domain(s): PF00271: Helicase conserved C-terminal domain, PF13959: Domain of unknown function (DUF4217), PF00270: DEAD/DEAH box helicase.


Gene families : OG_01_0002797 (Orthofinderv1.1.8) Phylogenetic Tree(s): OG0002797_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pbe RNA-seq: PBANKA_1024100
Cluster P. berghei: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
PF3D7_1419100 SPB4 SSF52540: P-loop containing nucleoside triphosphate... 0.1 Orthofinderv1.1.8

Type GO Term Name Evidence Source
BP GO:0000027 ribosomal large subunit assembly ISS PlasmoDB
MF GO:0003676 nucleic acid binding IEA Interproscan predictions
MF GO:0003676 nucleic acid binding IEA PlasmoDB
MF GO:0005524 ATP binding IEA Interproscan predictions
MF GO:0005524 ATP binding IEA PlasmoDB
CC GO:0030686 90S preribosome ISS PlasmoDB
Type GO Term Name Evidence Source
BP GO:0000054 ribosomal subunit export from nucleus IEP Predicted GO
BP GO:0000055 ribosomal large subunit export from nucleus IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
BP GO:0000469 cleavage involved in rRNA processing IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008479 queuine tRNA-ribosyltransferase activity IEP Predicted GO
MF GO:0008525 phosphatidylcholine transporter activity IEP Predicted GO
MF GO:0008526 phosphatidylinositol transporter activity IEP Predicted GO
BP GO:0008616 queuosine biosynthetic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
CC GO:0020005 symbiont-containing vacuole membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0030687 preribosome, large subunit precursor IEP Predicted GO
CC GO:0031428 box C/D snoRNP complex IEP Predicted GO
BP GO:0031503 protein-containing complex localization IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Predicted GO
BP GO:0033750 ribosome localization IEP Predicted GO
BP GO:0034462 small-subunit processome assembly IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
MF GO:0034511 U3 snoRNA binding IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042273 ribosomal large subunit biogenesis IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044217 other organism part IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0046116 queuosine metabolic process IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0051656 establishment of organelle localization IEP Predicted GO
MF GO:0071074 eukaryotic initiation factor eIF2 binding IEP Predicted GO
BP GO:0071426 ribonucleoprotein complex export from nucleus IEP Predicted GO
BP GO:0071428 rRNA-containing ribonucleoprotein complex export from nucleus IEP Predicted GO
CC GO:0097619 PTEX complex IEP Predicted GO
InterPro domains Description Start Stop
IPR025313 DUF4217 788 839
IPR011545 DEAD/DEAH_box_helicase_dom 42 407
IPR001650 Helicase_C 544 650