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  5. PBANKA_1111000

PBANKA_1111000


Description : SSF55120: Pseudouridine synthase, catalytic domain superfamily, SSF49599: TRAF-like. Pfam domain(s): PF00849: RNA pseudouridylate synthase.


Gene families : OG_01_0000168 (Orthofinderv1.1.8) Phylogenetic Tree(s): OG0000168_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pbe RNA-seq: PBANKA_1111000
Cluster P. berghei: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
PF3D7_0511500 No alias SSF48371: Armadillo-type fold, SSF55120: "Pseudouridine... 0.2 Orthofinderv1.1.8

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan predictions
BP GO:0001522 pseudouridine synthesis IEA PlasmoDB
MF GO:0003723 RNA binding IEA Interproscan predictions
MF GO:0003723 RNA binding IEA PlasmoDB
MF GO:0005515 protein binding IEA PlasmoDB
BP GO:0009451 RNA modification IEA Interproscan predictions
BP GO:0009451 RNA modification IEA PlasmoDB
MF GO:0009982 pseudouridine synthase activity IEA Interproscan predictions
MF GO:0009982 pseudouridine synthase activity IEA PlasmoDB
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Type GO Term Name Evidence Source
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predicted GO
CC GO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
BP GO:0006379 mRNA cleavage IEP Predicted GO
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008169 C-methyltransferase activity IEP Predicted GO
MF GO:0009383 rRNA (cytosine-C5-)-methyltransferase activity IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016434 rRNA (cytosine) methyltransferase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
CC GO:0030014 CCR4-NOT complex IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluD 6713 6799
PlasmoDB PB000019.00.0
PlasmoDB PB000201.00.0
PlasmoDB PB000260.02.0
PlasmoDB PB000286.02.0
PlasmoDB PB000475.02.0
PlasmoDB PB000482.03.0
PlasmoDB PB000631.03.0
PlasmoDB PB000906.03.0
PlasmoDB PB001055.03.0
PlasmoDB PB102858.00.0
PlasmoDB PB301237.00.0
PlasmoDB PBANKA_111100
PlasmoDB PBANKA_111110