Aliases : GAR1
Description : SSF50447: Translation protein, beta-barrel domain superfamily. Pfam domain(s): PF04410: Gar1/Naf1 RNA binding region.
Gene families : OG_01_0002025 (Orthofinderv1.1.8) Phylogenetic Tree(s): OG0002025_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pbe RNA-seq: PBANKA_1408000 | |
Cluster | P. berghei: Cluster_1 |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | Interproscan predictions |
BP | GO:0001522 | pseudouridine synthesis | IEA | PlasmoDB |
CC | GO:0031429 | box H/ACA snoRNP complex | IEA | PlasmoDB |
BP | GO:0042254 | ribosome biogenesis | IEA | Interproscan predictions |
BP | GO:0042254 | ribosome biogenesis | IEA | PlasmoDB |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000245 | spliceosomal complex assembly | IEP | Predicted GO |
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predicted GO |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predicted GO |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predicted GO |
MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
BP | GO:0002181 | cytoplasmic translation | IEP | Predicted GO |
MF | GO:0005525 | GTP binding | IEP | Predicted GO |
CC | GO:0005643 | nuclear pore | IEP | Predicted GO |
CC | GO:0005654 | nucleoplasm | IEP | Predicted GO |
CC | GO:0005686 | U2 snRNP | IEP | Predicted GO |
CC | GO:0005743 | mitochondrial inner membrane | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006397 | mRNA processing | IEP | Predicted GO |
BP | GO:0006448 | regulation of translational elongation | IEP | Predicted GO |
BP | GO:0008380 | RNA splicing | IEP | Predicted GO |
BP | GO:0016071 | mRNA metabolic process | IEP | Predicted GO |
MF | GO:0016880 | acid-ammonia (or amide) ligase activity | IEP | Predicted GO |
MF | GO:0017178 | diphthine-ammonia ligase activity | IEP | Predicted GO |
BP | GO:0017182 | peptidyl-diphthamide metabolic process | IEP | Predicted GO |
BP | GO:0017183 | peptidyl-diphthamide biosynthetic process from peptidyl-histidine | IEP | Predicted GO |
BP | GO:0018202 | peptidyl-histidine modification | IEP | Predicted GO |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
CC | GO:0019866 | organelle inner membrane | IEP | Predicted GO |
CC | GO:0020036 | Maurer's cleft | IEP | Predicted GO |
CC | GO:0030127 | COPII vesicle coat | IEP | Predicted GO |
MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
CC | GO:0033643 | host cell part | IEP | Predicted GO |
CC | GO:0033646 | host intracellular part | IEP | Predicted GO |
CC | GO:0033655 | host cell cytoplasm part | IEP | Predicted GO |
CC | GO:0044217 | other organism part | IEP | Predicted GO |
CC | GO:0070971 | endoplasmic reticulum exit site | IEP | Predicted GO |
BP | GO:1900247 | regulation of cytoplasmic translational elongation | IEP | Predicted GO |
BP | GO:2000765 | regulation of cytoplasmic translation | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007504 | H/ACA_rnp_Gar1/Naf1 | 22 | 149 |
PlasmoDB | PB000683.02.0 |
PlasmoDB | PBANKA_140800 |