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  5. PBANKA_1439200

PBANKA_1439200 (PABP1)


Aliases : PABP1

Description : SSF54928: RNA-binding domain superfamily, SSF63570: PABC (PABP) domain. Pfam domain(s): PF00658: Poly-adenylate binding protein, unique domain, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain).


Gene families : OG_01_0002158 (Orthofinderv1.1.8) Phylogenetic Tree(s): OG0002158_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pbe RNA-seq: PBANKA_1439200
Cluster P. berghei: Cluster_38


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan predictions
MF GO:0003676 nucleic acid binding IEA PlasmoDB
MF GO:0003723 RNA binding IEA Interproscan predictions
MF GO:0003723 RNA binding IEA PlasmoDB
MF GO:0005515 protein binding IPI PlasmoDB
CC GO:0005737 cytoplasm IDA PlasmoDB
CC GO:0005829 cytosol ISO PlasmoDB
MF GO:0008143 poly(A) binding ISO PlasmoDB
CC GO:0009986 cell surface ISO PlasmoDB
CC GO:0034399 nuclear periphery ISO PlasmoDB
CC GO:0043186 P granule IDA PlasmoDB
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Type GO Term Name Evidence Source
BP GO:0000027 ribosomal large subunit assembly IEP Predicted GO
CC GO:0000781 chromosome, telomeric region IEP Predicted GO
MF GO:0001047 core promoter binding IEP Predicted GO
MF GO:0001067 regulatory region nucleic acid binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0004725 protein tyrosine phosphatase activity IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
MF GO:0005548 phospholipid transporter activity IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008379 thioredoxin peroxidase activity IEP Predicted GO
MF GO:0008525 phosphatidylcholine transporter activity IEP Predicted GO
BP GO:0015748 organophosphate ester transport IEP Predicted GO
BP GO:0015914 phospholipid transport IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
CC GO:0030430 host cell cytoplasm IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
MF GO:0030621 U4 snRNA binding IEP Predicted GO
CC GO:0030687 preribosome, large subunit precursor IEP Predicted GO
MF GO:0034511 U3 snoRNA binding IEP Predicted GO
BP GO:0042273 ribosomal large subunit biogenesis IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0044212 transcription regulatory region DNA binding IEP Predicted GO
MF GO:0051920 peroxiredoxin activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002004 PABP_HYD 764 830
IPR000504 RRM_dom 106 174
IPR000504 RRM_dom 195 257
IPR000504 RRM_dom 18 86
IPR000504 RRM_dom 409 477
PlasmoDB PABP
PlasmoDB PB001286.00.0
PlasmoDB PBANKA_143920