PBANKA_1457500 (TFB2)

Aliases : TFB2

Description : No superfamily available. Pfam domain(s): PF03849: Transcription factor Tfb2.

Gene families : OG_01_0002225 (Orthofinderv1.1.8) Phylogenetic Tree(s): OG0002225_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pbe RNA-seq: PBANKA_1457500
Cluster	P. berghei: Cluster_39

Type	GO Term	Name	Evidence	Source
CC	GO:0000439	transcription factor TFIIH core complex	IEA	Interproscan predictions
CC	GO:0000439	transcription factor TFIIH core complex	IEA	PlasmoDB
MF	GO:0001671	ATPase activator activity	IEA	Interproscan predictions
MF	GO:0001671	ATPase activator activity	IEA	PlasmoDB
MF	GO:0003674	molecular_function	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	PlasmoDB
CC	GO:0005667	transcription factor complex	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	IEA	Interproscan predictions
BP	GO:0006289	nucleotide-excision repair	IEA	PlasmoDB
BP	GO:0006351	transcription, DNA-templated	None	Extended
BP	GO:0006366	transcription by RNA polymerase II	ISS	PlasmoDB
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
MF	GO:0008047	enzyme activator activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044798	nuclear transcription factor complex	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
MF	GO:0060589	nucleoside-triphosphatase regulator activity	None	Extended
MF	GO:0060590	ATPase regulator activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription factor complex	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0098772	molecular function regulator	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006298	mismatch repair	IEP	Predicted GO
BP	GO:0009116	nucleoside metabolic process	IEP	Predicted GO
MF	GO:0030983	mismatched DNA binding	IEP	Predicted GO
BP	GO:1901657	glycosyl compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR004598	TFIIH_p52/Tfb2	15	173
IPR004598	TFIIH_p52/Tfb2	576	816

External Links

PlasmoDB	PB000407.00.0
PlasmoDB	PBANKA_145750

PBANKA_1457500 (TFB2)

Expression Profile

Co-expression Networks

Functional Annotation