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  5. PF3D7_1321700

PF3D7_1321700 (SF1)


Aliases : SF1

Description : SSF54928: RNA-binding domain superfamily. Pfam domain(s): PF00076: "RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)", PF15519: linker between RRM2 and RRM3 domains in RBM39 protein.


Gene families : OG_01_0001882 (Orthofinderv1.1.8) Phylogenetic Tree(s): OG0001882_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pfa RNA-seq: PF3D7_1321700
Cluster P. falciparum: Cluster_22


Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions ISS PlasmoDB
MF GO:0003676 nucleic acid binding IEA Interproscan predictions
MF GO:0003676 nucleic acid binding IEA PlasmoDB
MF GO:0003723 RNA binding IEA PlasmoDB
MF GO:0003729 mRNA binding ISS PlasmoDB
CC GO:0005634 nucleus IEA PlasmoDB
BP GO:0006397 mRNA processing IEA PlasmoDB
BP GO:0008380 RNA splicing ISS PlasmoDB
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Type GO Term Name Evidence Source
MF GO:0000104 succinate dehydrogenase activity IEP Predicted GO
CC GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain IEP Predicted GO
BP GO:0000354 cis assembly of pre-catalytic spliceosome IEP Predicted GO
CC GO:0000974 Prp19 complex IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004407 histone deacetylase activity IEP Predicted GO
MF GO:0005201 extracellular matrix structural constituent IEP Predicted GO
CC GO:0005684 U2-type spliceosomal complex IEP Predicted GO
CC GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006405 RNA export from nucleus IEP Predicted GO
BP GO:0006446 regulation of translational initiation IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006873 cellular ion homeostasis IEP Predicted GO
BP GO:0006885 regulation of pH IEP Predicted GO
BP GO:0007035 vacuolar acidification IEP Predicted GO
MF GO:0008177 succinate dehydrogenase (ubiquinone) activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predicted GO
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016635 oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0019213 deacetylase activity IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
BP GO:0030003 cellular cation homeostasis IEP Predicted GO
BP GO:0030004 cellular monovalent inorganic cation homeostasis IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0030544 Hsp70 protein binding IEP Predicted GO
BP GO:0030641 regulation of cellular pH IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP Predicted GO
MF GO:0033558 protein deacetylase activity IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
MF GO:0036442 proton-exporting ATPase activity IEP Predicted GO
CC GO:0044437 vacuolar part IEP Predicted GO
CC GO:0045257 succinate dehydrogenase complex (ubiquinone) IEP Predicted GO
CC GO:0045281 succinate dehydrogenase complex IEP Predicted GO
CC GO:0045283 fumarate reductase complex IEP Predicted GO
BP GO:0045851 pH reduction IEP Predicted GO
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0050657 nucleic acid transport IEP Predicted GO
BP GO:0050658 RNA transport IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0051168 nuclear export IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051236 establishment of RNA localization IEP Predicted GO
BP GO:0051452 intracellular pH reduction IEP Predicted GO
BP GO:0051453 regulation of intracellular pH IEP Predicted GO
BP GO:0055067 monovalent inorganic cation homeostasis IEP Predicted GO
BP GO:0055082 cellular chemical homeostasis IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
CC GO:0071004 U2-type prespliceosome IEP Predicted GO
CC GO:0071010 prespliceosome IEP Predicted GO
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Predicted GO
CC GO:0098803 respiratory chain complex IEP Predicted GO
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Predicted GO
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR029123 RBM39_linker 705 781
IPR000504 RRM_dom 490 559
IPR000504 RRM_dom 588 661
PlasmoDB 813670
PlasmoDB MAL13P1.120