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PBANKA_1128400


Description : SSF54928: RNA-binding domain superfamily. Pfam domain(s): PF12923: Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain).


Gene families : OG_01_0004013 (Orthofinderv1.1.8) Phylogenetic Tree(s): OG0004013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pbe RNA-seq: PBANKA_1128400
Cluster P. berghei: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
PF3D7_0629600 No alias SSF54928: RNA-binding domain superfamily. Pfam... 0.04 Orthofinderv1.1.8

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan predictions
MF GO:0003676 nucleic acid binding IEA PlasmoDB
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
BP GO:0002143 tRNA wobble position uridine thiolation IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
CC GO:0005666 RNA polymerase III complex IEP Predicted GO
CC GO:0005736 RNA polymerase I complex IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006360 transcription by RNA polymerase I IEP Predicted GO
BP GO:0006383 transcription by RNA polymerase III IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0009304 tRNA transcription IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
CC GO:0030430 host cell cytoplasm IEP Predicted GO
BP GO:0034227 tRNA thio-modification IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042797 tRNA transcription by RNA polymerase III IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0098781 ncRNA transcription IEP Predicted GO
InterPro domains Description Start Stop
IPR024326 RRP7_C 163 223
IPR000504 RRM_dom 45 92
PlasmoDB PB000429.02.0
PlasmoDB PB403648.00.0
PlasmoDB PBANKA_112840